Mass Spectrometry

PyOpenMS is a comprehensive documentation skill for computational mass spectrometry using Python. It provides guidance for proteomics workflows including feature detection, peptide identification, protein quantification, and LC-MS/MS data processing pipelines.

This skill provides comprehensive guidance for using the matchms Python library for mass spectrometry data processing and analysis. It covers spectral similarity calculations, compound identification from spectral libraries, data filtering, and format conversion for metabolomics research workflows.